PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.E03955.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family M-type_MADS
Protein Properties Length: 169aa    MW: 19093.3 Da    PI: 10.309
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.E03955.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF73.51.8e-234087451
                    -SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    ++   rqv f kRr+g++KKA+ELS LCdaev +++fs+ gklyeyss
  Pahal.E03955.1 40 QDRLSRQVRFFKRRTGLFKKAFELSLLCDAEVVLLVFSPAGKLYEYSS 87
                    67889*****************************************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006626.7172989IPR002100Transcription factor, MADS-box
SMARTSM004321.3E-272988IPR002100Transcription factor, MADS-box
SuperFamilySSF554556.02E-2631114IPR002100Transcription factor, MADS-box
PRINTSPR004049.9E-253151IPR002100Transcription factor, MADS-box
PfamPF003193.6E-214185IPR002100Transcription factor, MADS-box
PRINTSPR004049.9E-255166IPR002100Transcription factor, MADS-box
PRINTSPR004049.9E-256687IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 169 aa     Download sequence    Send to blast
MDDASSTPTG DWLRQAGIPD GGRQGPSMAP RGRVQLRRFQ DRLSRQVRFF KRRTGLFKKA  60
FELSLLCDAE VVLLVFSPAG KLYEYSSSAS IEHTYDGYQQ FARARRNVNE ASQNRNNNQD  120
DASSDLKSRF REITTWSLQN NAKASDADEL GKLEDLLRNA LRDTKSKK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3p57_J2e-153188259Myocyte-specific enhancer factor 2A
3p57_I2e-153188259Myocyte-specific enhancer factor 2A
3p57_D2e-153188259Myocyte-specific enhancer factor 2A
3p57_C2e-153188259Myocyte-specific enhancer factor 2A
3p57_B2e-153188259Myocyte-specific enhancer factor 2A
3p57_A2e-153188259Myocyte-specific enhancer factor 2A
3kov_J2e-153188259Myocyte-specific enhancer factor 2A
3kov_I2e-153188259Myocyte-specific enhancer factor 2A
3kov_B2e-153188259Myocyte-specific enhancer factor 2A
3kov_A2e-153188259Myocyte-specific enhancer factor 2A
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF1848193e-60KF184819.1 Saccharum hybrid cultivar R570 clone BAC 004J16 complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004971093.18e-63PREDICTED: truncated transcription factor CAULIFLOWER D-like
TrEMBLA0A0A9D7Q66e-65A0A0A9D7Q6_ARUDO; Uncharacterized protein
STRINGSb03g044170.11e-59(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12938398
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11880.11e-28AGAMOUS-like 14